miRBase entry: prd-let-7

Stem-loop prd-let-7

Accession

MI0025558

Description

Panagrellus redivivus prd-let-7 precursor miRNA

Sequence

UGAGGUAGUAGGUUGUAUAGUUUuugauuguauaaaaACUGUCAAUCUACUAACUUAAC
((((.((((((((((.((((((((((......)))))))))))))))))))).))))..

Structure

--    G          U          au 
  UGAG UAGUAGGUUG AUAGUUUuug  u
  |||| |||||||||| ||||||||||   
  AUUC AUCAUCUAAC UGUCAaaaau  g
CA    A          -          au

Annotation confidence Not enough data

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Genome context

KB454933.1: 109398-109456 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-let-7

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-let-7-5p

Accession	MIMAT0030474
Description	Panagrellus redivivus prd-let-7-5p mature miRNA
Sequence	1 - UGAGGUAGUAGGUUGUAUAGUUU - 23
Evidence	experimental Illumina [1]

Mature prd-let-7-3p

Accession	MIMAT0030475
Description	Panagrellus redivivus prd-let-7-3p mature miRNA
Sequence	38 - ACUGUCAAUCUACUAACUUAAC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295