miRBase entry: prd-mir-72

Stem-loop prd-mir-72


Accession
MI0025560
Description
Panagrellus redivivus prd-mir-72 precursor miRNA
Gene family
MIPF0000277; mir-72


Sequence

AGGCAAGAUGUUGGCAUAGCUGagucccauucaauauuuguaucucaGCCAUGCUACAUAGGGCCAUG
.(((...((((.(((((.((((((...((.........))...)))))).)))))))))...)))...

Structure
--A   AAG    U     A      ucc  uuc 
   GGC   AUGU GGCAU GCUGag   ca   a
   |||   |||| ||||| ||||||   ||   a
   CCG   UACA UCGUA CGacuc   gu   u
GUA   GGA    -     C      uau  uua 


Annotation confidence Not enough data
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Genome context
KB455323.1: 49053-49120 [+]

Database links

Mature prd-miR-72-5p

Accession MIMAT0030478
Description Panagrellus redivivus prd-miR-72-5p mature miRNA
Sequence 1 - AGGCAAGAUGUUGGCAUAGCUG - 22
Evidence experimental
Illumina [1]

Mature prd-miR-72-3p

Accession MIMAT0030479
Description Panagrellus redivivus prd-miR-72-3p mature miRNA
Sequence 48 - GCCAUGCUACAUAGGGCCAUG - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295