miRBase entry: prd-mir-50

Stem-loop prd-mir-50


Accession
MI0025562
Description
Panagrellus redivivus prd-mir-50 precursor miRNA


Sequence

UGAUAUGUCUGGUAUUCUUGGGUUgugccagaaugagaucaaCCGGCGUGCUAGGCAUAUCCU
.((((((((((((((...(.(((((..(((...)).)..))))).).))))))))))))))..

Structure
-U              UCU G     ug -  g 
  GAUAUGUCUGGUAU   U GGUUg  c ca  
  ||||||||||||||   | |||||  | || a
  CUAUACGGAUCGUG   G CCaac  g gu  
UC              --C G     ua a  a 


Annotation confidence Not enough data
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Genome context
KB455345.1: 160203-160265 [-]

Database links

Mature prd-miR-50-5p

Accession MIMAT0030482
Description Panagrellus redivivus prd-miR-50-5p mature miRNA
Sequence 1 - UGAUAUGUCUGGUAUUCUUGGGUU - 24
Evidence experimental
Illumina [1]

Mature prd-miR-50-3p

Accession MIMAT0030483
Description Panagrellus redivivus prd-miR-50-3p mature miRNA
Sequence 43 - CCGGCGUGCUAGGCAUAUCCU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295