miRBase entry: prd-mir-34

Stem-loop prd-mir-34

Accession

MI0025568

Description

Panagrellus redivivus prd-mir-34 precursor miRNA

Gene family

MIPF0000039; mir-34

Sequence

UGGCAGUGUGGUUAGCUGGUUGuuguuaaugaccaguucaACGGCUAUCUGGCACUGCCCGCC
.(((((((((((((((((((((((...)))))))))))....)))).....))))))))....

Structure

---U        -----    ----           g 
    GGCAGUGU     GGUU    AGCUGGUUGuu  
    ||||||||     ||||    ||||||||||| u
    CCGUCACG     UCGG    uugaccaguaa  
CCGC        GUCUA    CAac           u

Annotation confidence Not enough data

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Genome context

KB455532.1: 889249-889311 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-34

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-34-5p

Accession	MIMAT0030494
Description	Panagrellus redivivus prd-miR-34-5p mature miRNA
Sequence	1 - UGGCAGUGUGGUUAGCUGGUUG - 22
Evidence	experimental Illumina [1]

Mature prd-miR-34-3p

Accession	MIMAT0030495
Description	Panagrellus redivivus prd-miR-34-3p mature miRNA
Sequence	41 - ACGGCUAUCUGGCACUGCCCGCC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295