Stem-loop prd-mir-46

Accession

MI0025575

Description

Panagrellus redivivus prd-mir-46 precursor miRNA

Gene family

MIPF0000087; mir-46

Sequence

AAGAGAGCCAUCUGUUGACAGUuugccuuugaaauuacUGUCAUGGAGUUGCUCUCUUA
((((((((..(((((.((((((..............)))))))))))...)))))))).

Structure

-        -CA     U      uugccu 
 AAGAGAGC   UCUGU GACAGU      u
 ||||||||   ||||| ||||||       
 UUCUCUCG   AGGUA CUGUca      u
A        UUG     -      uuaaag 

Annotation confidence Not enough data

Genome context

KB455535.1: 288919-288977 [+]

Mature prd-miR-46-5p

• Accession: MIMAT0030508
• Description: Panagrellus redivivus prd-miR-46-5p mature miRNA
• Sequence: 1 - AAGAGAGCCAUCUGUUGACAGU - 22
• Evidence: experimental ; Illumina [1]

Mature prd-miR-46-3p

• Accession: MIMAT0030509
• Description: Panagrellus redivivus prd-miR-46-3p mature miRNA
• Sequence: 39 - UGUCAUGGAGUUGCUCUCUUA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295