Stem-loop prd-mir-35b

Accession

MI0025576

Description

Panagrellus redivivus prd-mir-35b precursor miRNA

Sequence

AACUAGUACGCUCUGUGGUaaaagugauuuugaaaacuuUCACCGGGAACGUAUUAGUUA
((((((((((.(((.((((.(((((..........))))).))))))).)))))))))).

Structure

-          C   G    a     gauu 
 AACUAGUACG UCU UGGU aaagu    u
 |||||||||| ||| |||| |||||     
 UUGAUUAUGC AGG GCCA Uuuca    u
A          A   -    C     aaag 

Annotation confidence Not enough data

Genome context

KB455309.1: 33321-33380 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from prd-mir-35b

Mature prd-miR-35b-5p

• Accession: MIMAT0030510
• Description: Panagrellus redivivus prd-miR-35b-5p mature miRNA
• Sequence: 1 - AACUAGUACGCUCUGUGGU - 19
• Evidence: experimental ; Illumina [1]

Mature prd-miR-35b-3p

• Accession: MIMAT0030511
• Description: Panagrellus redivivus prd-miR-35b-3p mature miRNA
• Sequence: 40 - UCACCGGGAACGUAUUAGUUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295