miRBase entry: prd-mir-242

Stem-loop prd-mir-242


Accession
MI0025579
Description
Panagrellus redivivus prd-mir-242 precursor miRNA


Sequence

UUGCGUAGGCACUUUGUCACCGauggcguauggcauucucGAUGCAAAGAGCUAUGCAACC
((((((((.(.(((((.((.(((..((.....))....))).))))))).)))))))))..

Structure
--        G A     U  C   --ug  g 
  UUGCGUAG C CUUUG CA CGa    gc u
  |||||||| | ||||| || |||    || a
  AACGUAUC G GAAAC GU Gcu    cg u
CC        - A     -  A   cuua  g 


Annotation confidence Not enough data
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Genome context
KB455494.1: 95862-95922 [+]

Database links

Mature prd-miR-242-5p

Accession MIMAT0030516
Description Panagrellus redivivus prd-miR-242-5p mature miRNA
Sequence 1 - UUGCGUAGGCACUUUGUCACCG - 22
Evidence experimental
Illumina [1]

Mature prd-miR-242-3p

Accession MIMAT0030517
Description Panagrellus redivivus prd-miR-242-3p mature miRNA
Sequence 41 - GAUGCAAAGAGCUAUGCAACC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295