miRBase entry: prd-mir-7880a

Stem-loop prd-mir-7880a


Accession
MI0025580
Description
Panagrellus redivivus prd-mir-7880a precursor miRNA


Sequence

UGACCUGGAAUGGUGUGUAACAGCaaucccuuauuuagcUUUGCGACCGUAUCCAGGCCA
...(((((((((((.(((((.(((((........)).))))))))))))).))))))...

Structure
UGA      -     G     C   -  ucc 
   CCUGGA AUGGU UGUAA AGC aa   c
   |||||| ||||| ||||| ||| ||    
   GGACCU UGCCA GCGUU Ucg uu   u
ACC      A     -     -   a  uau 


Annotation confidence Not enough data
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Genome context
KB454964.1: 33315-33374 [+]

Database links

Mature prd-miR-7880a-5p

Accession MIMAT0030518
Description Panagrellus redivivus prd-miR-7880a-5p mature miRNA
Sequence 1 - UGACCUGGAAUGGUGUGUAACAGC - 24
Evidence experimental
Illumina [1]

Mature prd-miR-7880a-3p

Accession MIMAT0030519
Description Panagrellus redivivus prd-miR-7880a-3p mature miRNA
Sequence 40 - UUUGCGACCGUAUCCAGGCCA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295