miRBase entry: prd-mir-7940c

Stem-loop prd-mir-7940c


Accession
MI0025589
Description
Panagrellus redivivus prd-mir-7940c precursor miRNA


Sequence

UGUGAGACGGAUCUCCGGUCAUUugcaaugaguuaaUGACUGGAAUUGCGUCUUUCGU
.(.((((((.(..((((((((((.((.....)).))))))))))..).)))))).)..

Structure
-U U      G UC          u  a 
  G GAGACG A  UCCGGUCAUU gc a
  | |||||| |  |||||||||| || u
  C UUCUGC U  AGGUCAGUaa ug g
UG U      G UA          u  a 


Annotation confidence Not enough data
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Genome context
KB455127.1: 278641-278698 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from prd-mir-7940c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7940c-5p

Accession MIMAT0030536
Description Panagrellus redivivus prd-miR-7940c-5p mature miRNA
Sequence 1 - UGUGAGACGGAUCUCCGGUCAUU - 23
Evidence experimental
Illumina [1]

Mature prd-miR-7940c-3p

Accession MIMAT0030537
Description Panagrellus redivivus prd-miR-7940c-3p mature miRNA
Sequence 37 - UGACUGGAAUUGCGUCUUUCGU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295