Stem-loop prd-mir-7888

Accession

MI0025595

Description

Panagrellus redivivus prd-mir-7888 precursor miRNA

Sequence

UGAAAAAUGGAUAAUGAGUAAUCugcgaauguuugaUAACUCUGAUUCAUCUUUCAUG
(((((.((((((...((((.(((.((....))..))).))))..)))))).)))))..

Structure

--     A      AAU    A   -u  g 
  UGAAA AUGGAU   GAGU AUC  gc a
  ||||| ||||||   |||| |||  ||  
  ACUUU UACUUA   CUCA Uag  ug a
GU     C      -GU    A   uu  u 

Annotation confidence Not enough data

Genome context

KB455127.1: 277591-277648 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from prd-mir-7888

Mature prd-miR-7888-5p

• Accession: MIMAT0030548
• Description: Panagrellus redivivus prd-miR-7888-5p mature miRNA
• Sequence: 1 - UGAAAAAUGGAUAAUGAGUAAUC - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7888-3p

• Accession: MIMAT0030549
• Description: Panagrellus redivivus prd-miR-7888-3p mature miRNA
• Sequence: 37 - UAACUCUGAUUCAUCUUUCAUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295