miRBase entry: prd-mir-7940b

Stem-loop prd-mir-7940b

Accession

MI0025599

Description

Panagrellus redivivus prd-mir-7940b precursor miRNA

Gene family

MIPF0001719; mir-7940

Sequence

GUAAGAUGAAUCUACGGUUAUUugcaguuaguuaaUCACCGGGAUUGCAUCUUUCGA
(.(((((((((((.((((.(((.((.....)).))).))))))))).)))))).)..

Structure

-- U      -     A    U   u  a 
  G AAGAUG AAUCU CGGU AUU gc g
  | |||||| ||||| |||| ||| || u
  C UUCUAC UUAGG GCCA Uaa ug u
AG U      G     -    C   u  a

Annotation confidence Not enough data

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Genome context

KB455127.1: 277451-277507 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from prd-mir-7940b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7940b-5p

Accession	MIMAT0030556
Description	Panagrellus redivivus prd-miR-7940b-5p mature miRNA
Sequence	1 - GUAAGAUGAAUCUACGGUUAUU - 22
Evidence	experimental Illumina [1]

Mature prd-miR-7940b-3p

Accession	MIMAT0030557
Description	Panagrellus redivivus prd-miR-7940b-3p mature miRNA
Sequence	36 - UCACCGGGAUUGCAUCUUUCGA - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295