Stem-loop prd-mir-2

Accession

MI0025600

Description

Panagrellus redivivus prd-mir-2 precursor miRNA

Sequence

AACCAUAUCGCGUUUGGGAUGCauuuuuuguuugcuuugUAUCACAGCGCUCGAUAUGGCCCU
..((((((((((((.(.((((((..............)))))).))))))..)))))))....

Structure

--AA       --     U G      uuuuuu 
    CCAUAUC  GCGUU G GAUGCa      g
    |||||||  ||||| | ||||||       
    GGUAUAG  CGCGA C CUAUgu      u
UCCC       CU     - A      uucguu 

Annotation confidence Not enough data

Genome context

KB455367.1: 125314-125376 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-2

Mature prd-miR-2-5p

• Accession: MIMAT0030558
• Description: Panagrellus redivivus prd-miR-2-5p mature miRNA
• Sequence: 1 - AACCAUAUCGCGUUUGGGAUGC - 22
• Evidence: experimental ; Illumina [1]

Mature prd-miR-2-3p

• Accession: MIMAT0030559
• Description: Panagrellus redivivus prd-miR-2-3p mature miRNA
• Sequence: 40 - UAUCACAGCGCUCGAUAUGGCCCU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295