miRBase entry: prd-mir-61

Stem-loop prd-mir-61


Accession
MI0025610
Description
Panagrellus redivivus prd-mir-61 precursor miRNA


Sequence

AUGGGUAUGAGUCACAGUCAUGcggucauuguaaaccaUGACUAGAUCCAUACUCAGCU
.((((((((.(((..(((((((.(...........)))))))).))).))))))))...

Structure
--A        A   AC       c guca 
   UGGGUAUG GUC  AGUCAUG g    u
   |||||||| |||  ||||||| |    u
   ACUCAUAC UAG  UCAGUac c    g
UCG        C   -A       - aaau 


Annotation confidence Not enough data
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Genome context
KB455367.1: 125174-125232 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-61
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-61-5p

Accession MIMAT0030578
Description Panagrellus redivivus prd-miR-61-5p mature miRNA
Sequence 1 - AUGGGUAUGAGUCACAGUCAUG - 22
Evidence experimental
Illumina [1]

Mature prd-miR-61-3p

Accession MIMAT0030579
Description Panagrellus redivivus prd-miR-61-3p mature miRNA
Sequence 39 - UGACUAGAUCCAUACUCAGCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295