miRBase entry: prd-mir-240

Stem-loop prd-mir-240


Accession
MI0025617
Description
Panagrellus redivivus prd-mir-240 precursor miRNA


Sequence

UCCAGAGUUUGACGCGCUAGAAUGuuuucugaucaucaUACUGGCCUUUCAAACUCUUGGG
.(((((((((((...(((((.(((............))).)))))...)))))))).))).

Structure
U   -        CGC     A   uuuuc 
 CCA GAGUUUGA   GCUAG AUG     u
 ||| ||||||||   ||||| |||      
 GGU CUCAAACU   CGGUC Uac     g
G   U        UUC     A   uacua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB455188.1: 52367-52427 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from prd-mir-240
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-240-5p

Accession MIMAT0030592
Description Panagrellus redivivus prd-miR-240-5p mature miRNA
Sequence 1 - UCCAGAGUUUGACGCGCUAGAAUG - 24
Evidence experimental
Illumina [1]

Mature prd-miR-240-3p

Accession MIMAT0030593
Description Panagrellus redivivus prd-miR-240-3p mature miRNA
Sequence 39 - UACUGGCCUUUCAAACUCUUGGG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295