Stem-loop prd-mir-235

Accession

MI0025622

Description

Panagrellus redivivus prd-mir-235 precursor miRNA

Gene family

MIPF0000013; mir-25

Sequence

AGGAAGGGGCGUUUGGAAUGUUucuuuuucuguuguaaUAUUGCACUCGUCCCGGCCUG
(((..((((((..((.((((((.(..........).)))))).))..))))))..))).

Structure

-   AA      UU  G      u uuuu 
 AGG  GGGGCG  UG AAUGUU c    u
 |||  ||||||  || |||||| |     
 UCC  CCCUGC  AC UUAUaa g    c
G   GG      UC  G      u uugu 

Annotation confidence Not enough data

Genome context

KB455447.1: 45208-45266 [-]

Mature prd-miR-235-5p

• Accession: MIMAT0030602
• Description: Panagrellus redivivus prd-miR-235-5p mature miRNA
• Sequence: 1 - AGGAAGGGGCGUUUGGAAUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature prd-miR-235-3p

• Accession: MIMAT0030603
• Description: Panagrellus redivivus prd-miR-235-3p mature miRNA
• Sequence: 39 - UAUUGCACUCGUCCCGGCCUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295