miRBase entry: prd-mir-7918a

Stem-loop prd-mir-7918a

Accession

MI0025624

Description

Panagrellus redivivus prd-mir-7918a precursor miRNA

Gene family

MIPF0001655; mir-7918

Sequence

AUUUGGCUCUGAAAUCUUGCUGUgucaauucaauuccaGCAAGUUCCAGAGCCUUUUGA
....(((((((.((.(((((((.(...........)))))))))).)))))))......

Structure

--AUUU       A  U       U ucaa 
      GGCUCUG AA CUUGCUG g    u
      ||||||| || ||||||| |    u
      CCGAGAC UU GAACGac c    c
AGUUUU       C  -       - uuaa

Annotation confidence Not enough data

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Genome context

KB455157.1: 166963-167021 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7918a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7918a-5p

Accession	MIMAT0030606
Description	Panagrellus redivivus prd-miR-7918a-5p mature miRNA
Sequence	1 - AUUUGGCUCUGAAAUCUUGCUGU - 23
Evidence	experimental Illumina [1]

Mature prd-miR-7918a-3p

Accession	MIMAT0030607
Description	Panagrellus redivivus prd-miR-7918a-3p mature miRNA
Sequence	39 - GCAAGUUCCAGAGCCUUUUGA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295