miRBase entry: prd-mir-7908

Stem-loop prd-mir-7908


Accession
MI0025635
Description
Panagrellus redivivus prd-mir-7908 precursor miRNA


Sequence

AGCAUCACUAUCCUUUGACAAACuguaauuaguaaucaguUAGUCAAGGAGUUGAUUGCUGG
(((((((...(((((.(((.(((((...........))))).))))))))..))).))))..

Structure
--    -   CUA     U   A     uaau 
  AGCA UCA   UCCUU GAC AACug    u
  |||| |||   ||||| ||| |||||    a
  UCGU AGU   AGGAA CUG Uugac    g
GG    U   -UG     -   A     uaau 


Annotation confidence Not enough data
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Genome context
KB455208.1: 122837-122898 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from prd-mir-7908
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7908-5p

Accession MIMAT0030628
Description Panagrellus redivivus prd-miR-7908-5p mature miRNA
Sequence 1 - AGCAUCACUAUCCUUUGACAAAC - 23
Evidence experimental
Illumina [1]

Mature prd-miR-7908-3p

Accession MIMAT0030629
Description Panagrellus redivivus prd-miR-7908-3p mature miRNA
Sequence 41 - UAGUCAAGGAGUUGAUUGCUGG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295