miRBase entry: prd-mir-7579

Stem-loop prd-mir-7579


Accession
MI0025636
Description
Panagrellus redivivus prd-mir-7579 precursor miRNA


Sequence

CAUCACCCUCAGCAUUCUCAACauguccaaaaaucacgUUGAGAAUUUGUGGGCGGUAA
.(((.(((.(((.(((((((((.((.........)).)))))))))))).))).)))..

Structure
-C   A   U   C         a  ucc 
  AUC CCC CAG AUUCUCAAC ug   a
  ||| ||| ||| ||||||||| ||   a
  UGG GGG GUU UAAGAGUUg ac   a
AA   C   U   -         c  uaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB455551.1: 21318-21376 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-7579
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7579-5p

Accession MIMAT0030630
Description Panagrellus redivivus prd-miR-7579-5p mature miRNA
Sequence 1 - CAUCACCCUCAGCAUUCUCAAC - 22
Evidence experimental
Illumina [1]

Mature prd-miR-7579-3p

Accession MIMAT0030631
Description Panagrellus redivivus prd-miR-7579-3p mature miRNA
Sequence 39 - UUGAGAAUUUGUGGGCGGUAA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295