Stem-loop prd-mir-7939c

Accession

MI0025637

Description

Panagrellus redivivus prd-mir-7939c precursor miRNA

Gene family

MIPF0001646; mir-7939

Sequence

CAUAGGCCCUCAAGGCAUUCauguuauuauucaaaucaUGAAUGUUUUGGAGGCCCGUGG
(((.((((.((((((((((((((.............)))))))))))))).)))).))).

Structure

-   A    C              uuauu 
 CAU GGCC UCAAGGCAUUCaug     a
 ||| |||| ||||||||||||||     u
 GUG CCGG GGUUUUGUAAGUac     u
G   C    A              uaaac 

Annotation confidence Not enough data

Genome context

KB455091.1: 115118-115177 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from prd-mir-7939c

Mature prd-miR-7939c-5p

• Accession: MIMAT0030632
• Description: Panagrellus redivivus prd-miR-7939c-5p mature miRNA
• Sequence: 1 - CAUAGGCCCUCAAGGCAUUC - 20
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7939c-3p

• Accession: MIMAT0030633
• Description: Panagrellus redivivus prd-miR-7939c-3p mature miRNA
• Sequence: 39 - UGAAUGUUUUGGAGGCCCGUGG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295