Stem-loop prd-mir-7939f

Accession

MI0025641

Description

Panagrellus redivivus prd-mir-7939f precursor miRNA

Gene family

MIPF0001646; mir-7939

Sequence

CAUGGGCCCUCAAGCCAUUCauguuaucauucaaaucaUGAAUGUUAUGAAGGUCCACGGC
..((((((.(((...((((((((.............))))))))...))).))))))....

Structure

--CA      C   AGC        uuauc 
    UGGGCC UCA   CAUUCaug     a
    |||||| |||   ||||||||     u
    ACCUGG AGU   GUAAGUac     u
CGGC      A   AUU        uaaac 

Annotation confidence Not enough data

Genome context

KB455481.1: 162134-162194 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7939f

Mature prd-miR-7939f-5p

• Accession: MIMAT0030640
• Description: Panagrellus redivivus prd-miR-7939f-5p mature miRNA
• Sequence: 1 - CAUGGGCCCUCAAGCCAUUC - 20
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7939f-3p

• Accession: MIMAT0030641
• Description: Panagrellus redivivus prd-miR-7939f-3p mature miRNA
• Sequence: 39 - UGAAUGUUAUGAAGGUCCACGGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295