Stem-loop prd-mir-7939d

Accession

MI0025642

Description

Panagrellus redivivus prd-mir-7939d precursor miRNA

Gene family

MIPF0001646; mir-7939

Sequence

CAUGGGCCCUCAAGCCAUUCauguugucauucaaaucaUGACUGUUUUGGAGGCCCGUGGC
((((((((.(((((.((.((((((((.....)))..))))).)).))))).))))))))..

Structure

--        C     C  U     --   u 
  CAUGGGCC UCAAG CA UCaug  uug c
  |||||||| ||||| || |||||  ||| a
  GUGCCCGG GGUUU GU AGUac  aac u
CG        A     U  C     ua   u 

Annotation confidence Not enough data

Genome context

KB455091.1: 115652-115712 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from prd-mir-7939d

Mature prd-miR-7939d-5p

• Accession: MIMAT0030642
• Description: Panagrellus redivivus prd-miR-7939d-5p mature miRNA
• Sequence: 1 - CAUGGGCCCUCAAGCCAUUC - 20
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7939d-3p

• Accession: MIMAT0030643
• Description: Panagrellus redivivus prd-miR-7939d-3p mature miRNA
• Sequence: 39 - UGACUGUUUUGGAGGCCCGUGGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295