miRBase entry: prd-mir-7927b

Stem-loop prd-mir-7927b


Accession
MI0025643
Description
Panagrellus redivivus prd-mir-7927b precursor miRNA
Gene family
MIPF0001660; mir-7927


Sequence

CGGGGCGCUUCUUUGACUGAUGuuguuaugcuuaUCAGUCAUUGAAGUGCUCUGAU
(((((((((((..(((((((((..........)))))))))..)))))))))))..

Structure
--           UU         uugu 
  CGGGGCGCUUC  UGACUGAUG    u
  |||||||||||  |||||||||     
  GUCUCGUGAAG  ACUGACUau    a
UA           UU         ucgu 


Annotation confidence Not enough data
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Genome context
KB455257.1: 512776-512831 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from prd-mir-7927b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7927b-5p

Accession MIMAT0030644
Description Panagrellus redivivus prd-miR-7927b-5p mature miRNA
Sequence 1 - CGGGGCGCUUCUUUGACUGAUG - 22
Evidence experimental
Illumina [1]

Mature prd-miR-7927b-3p

Accession MIMAT0030645
Description Panagrellus redivivus prd-miR-7927b-3p mature miRNA
Sequence 35 - UCAGUCAUUGAAGUGCUCUGAU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295