Stem-loop prd-mir-7939e

Accession

MI0025647

Description

Panagrellus redivivus prd-mir-7939e precursor miRNA

Gene family

MIPF0001646; mir-7939

Sequence

UAUGGGCCCUUAAACCAUUCAUGuugccauccaaaucaUGAAUGUUUUGGAGGCCCGUGG
((((((((.(((((.((((((((((........)).)))))))).))))).)))))))).

Structure

-        C     C        -  gcc 
 UAUGGGCC UUAAA CAUUCAUG uu   a
 |||||||| ||||| |||||||| ||    
 GUGCCCGG GGUUU GUAAGUac aa   u
G        A     U        u  acc 

Annotation confidence Not enough data

Genome context

KB455481.1: 161575-161634 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7939e

Mature prd-miR-7939e-5p

• Accession: MIMAT0030652
• Description: Panagrellus redivivus prd-miR-7939e-5p mature miRNA
• Sequence: 1 - UAUGGGCCCUUAAACCAUUCAUG - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7939e-3p

• Accession: MIMAT0030653
• Description: Panagrellus redivivus prd-miR-7939e-3p mature miRNA
• Sequence: 39 - UGAAUGUUUUGGAGGCCCGUGG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295