miRBase entry: prd-mir-7939h

Stem-loop prd-mir-7939h


Accession
MI0025652
Description
Panagrellus redivivus prd-mir-7939h precursor miRNA
Gene family
MIPF0001646; mir-7939


Sequence

UAUGAGCCCUCAUGACAUUCUUGuuaucacuaaaaucaUGAAUGUUAUGAAGGCCCACGAC
..((.(((.(((((((((((.((.............)).))))))))))).))).))....

Structure
--UA  A   C           U  uuauc 
    UG GCC UCAUGACAUUC UG     a
    || ||| ||||||||||| ||     c
    AC CGG AGUAUUGUAAG ac     u
CAGC  C   A           U  uaaaa 


Annotation confidence Not enough data
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Genome context
KB455091.1: 117063-117123 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from prd-mir-7939h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7939h-5p

Accession MIMAT0030662
Description Panagrellus redivivus prd-miR-7939h-5p mature miRNA
Sequence 1 - UAUGAGCCCUCAUGACAUUCUUG - 23
Evidence experimental
Illumina [1]

Mature prd-miR-7939h-3p

Accession MIMAT0030663
Description Panagrellus redivivus prd-miR-7939h-3p mature miRNA
Sequence 39 - UGAAUGUUAUGAAGGCCCACGAC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295