Stem-loop prd-mir-7957b

Accession

MI0025655

Description

Panagrellus redivivus prd-mir-7957b precursor miRNA

Gene family

MIPF0001668; mir-7957

Sequence

AAUUUGUCCUUGGUCACAUUACUGuuuuuuguuaucuGUAAUUUGCCGAGGACGAAAU
..(((((((((((.((.(((((...............))))).)))))))))))))..

Structure

AA           U  C     UGuuuu 
  UUUGUCCUUGG CA AUUAC      u
  ||||||||||| || |||||      u
  AAGCAGGAGCC GU UAAUG      g
UA           -  U     ucuauu 

Annotation confidence Not enough data

Genome context

KB455532.1: 356972-357029 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7957b

Mature prd-miR-7957b-5p

• Accession: MIMAT0030668
• Description: Panagrellus redivivus prd-miR-7957b-5p mature miRNA
• Sequence: 1 - AAUUUGUCCUUGGUCACAUUACUG - 24
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7957b-3p

• Accession: MIMAT0030669
• Description: Panagrellus redivivus prd-miR-7957b-3p mature miRNA
• Sequence: 38 - GUAAUUUGCCGAGGACGAAAU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295