miRBase entry: prd-mir-7948b

Stem-loop prd-mir-7948b


Accession
MI0025668
Description
Panagrellus redivivus prd-mir-7948b precursor miRNA
Gene family
MIPF0001695; mir-7948


Sequence

CAUCGGCCCCAUGUUGCGUUGCUgugugauuugaaaucagCAAACGCACAUGGGGUUGACG
..((((((((((((.(((((((((.((........)))))).)))))))))))))))))..

Structure
CA            U     -    u  gau 
  UCGGCCCCAUGU GCGUU GCUg gu   u
  |||||||||||| ||||| |||| ||    
  AGUUGGGGUACA CGCAA Cgac ua   u
GC            -     A    -  aag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB455257.1: 464920-464980 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-7948b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7948b-5p

Accession MIMAT0030694
Description Panagrellus redivivus prd-miR-7948b-5p mature miRNA
Sequence 1 - CAUCGGCCCCAUGUUGCGUUGCU - 23
Evidence experimental
Illumina [1]

Mature prd-miR-7948b-3p

Accession MIMAT0030695
Description Panagrellus redivivus prd-miR-7948b-3p mature miRNA
Sequence 41 - CAAACGCACAUGGGGUUGACG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295