miRBase entry: prd-mir-7930

Stem-loop prd-mir-7930

Accession

MI0025675

Description

Panagrellus redivivus prd-mir-7930 precursor miRNA

Sequence

CUACUAUGCCUUCACCCUUUUGCGuuaguguaaaaccgcAAAGGAUGUUGGUAGAGUAUUG
.((((.((((..((.(((((.(((...((.....)))))))))).))..)))).))))...

Structure

--C    A    UU  C     U   uua  g 
   UACU UGCC  CA CCUUU GCG   gu u
   |||| ||||  || ||||| |||   || a
   AUGA AUGG  GU GGAAA cgc   ca a
GUU    G    UU  A     -   ---  a

Annotation confidence Not enough data

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Genome context

KB455551.1: 21041-21101 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7930

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7930-5p

Accession	MIMAT0030708
Description	Panagrellus redivivus prd-miR-7930-5p mature miRNA
Sequence	1 - CUACUAUGCCUUCACCCUUUUGCG - 24
Evidence	experimental Illumina [1]

Mature prd-miR-7930-3p

Accession	MIMAT0030709
Description	Panagrellus redivivus prd-miR-7930-3p mature miRNA
Sequence	40 - AAAGGAUGUUGGUAGAGUAUUG - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295