Stem-loop prd-mir-35a

Accession

MI0025678

Description

Panagrellus redivivus prd-mir-35a precursor miRNA

Sequence

AACUUCUGUUUGCCACAGUGGGCguuugccauacagcUCACCGGGUAGACAGAAGUUA
((((((((((((((.(.((((((((.......)).)))))).))))))))))))))).

Structure

-              A A      -  uu 
 AACUUCUGUUUGCC C GUGGGC gu  g
 |||||||||||||| | |||||| ||  c
 UUGAAGACAGAUGG G CACUcg ca  c
A              - C      a  ua 

Annotation confidence Not enough data

Genome context

KB455309.1: 33211-33268 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from prd-mir-35a

Mature prd-miR-35a-5p

• Accession: MIMAT0030714
• Description: Panagrellus redivivus prd-miR-35a-5p mature miRNA
• Sequence: 1 - AACUUCUGUUUGCCACAGUGGGC - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-35a-3p

• Accession: MIMAT0030715
• Description: Panagrellus redivivus prd-miR-35a-3p mature miRNA
• Sequence: 38 - UCACCGGGUAGACAGAAGUUA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295