Stem-loop prd-mir-1

Accession

MI0025681

Description

Panagrellus redivivus prd-mir-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Sequence

ACGUGCUUCUUUGCAAGACCAUAgugaauacuguuuaUGGAAUGUAAAGAAGUAUGUAG
(((((((((((((((...((((((..........))))))..)))))))))))))))..

Structure

--               AGA      ugaa 
  ACGUGCUUCUUUGCA   CCAUAg    u
  |||||||||||||||   ||||||     
  UGUAUGAAGAAAUGU   GGUauu    a
GA               -AA      uguc 

Annotation confidence Not enough data

Genome context

KB455090.1: 26488-26546 [+]

Mature prd-miR-1-5p

• Accession: MIMAT0030720
• Description: Panagrellus redivivus prd-miR-1-5p mature miRNA
• Sequence: 1 - ACGUGCUUCUUUGCAAGACCAUA - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-1-3p

• Accession: MIMAT0030721
• Description: Panagrellus redivivus prd-miR-1-3p mature miRNA
• Sequence: 38 - UGGAAUGUAAAGAAGUAUGUAG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295