miRBase entry: prd-mir-7948a

Stem-loop prd-mir-7948a


Accession
MI0025685
Description
Panagrellus redivivus prd-mir-7948a precursor miRNA
Gene family
MIPF0001695; mir-7948


Sequence

CAUCGGCCCAAUGUUGCGUUGCUgugucauuugaaaucagCAAACGCACAUGGAGUCUGUGAU
(((.((((((.(((.(((((((((..((....))...)))).))))))))))).))).)))..

Structure
--   C   -   A   U     -    -ug  a 
  CAU GGC CCA UGU GCGUU GCUg   uc u
  ||| ||| ||| ||| ||||| ||||   ||  
  GUG CUG GGU ACA CGCAA Cgac   ag u
UA   U   A   -   -     A    uaa  u 


Annotation confidence Not enough data
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Genome context
KB455445.1: 36701-36763 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-7948a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7948a-5p

Accession MIMAT0030728
Description Panagrellus redivivus prd-miR-7948a-5p mature miRNA
Sequence 1 - CAUCGGCCCAAUGUUGCGUUGCU - 23
Evidence experimental
Illumina [1]

Mature prd-miR-7948a-3p

Accession MIMAT0030729
Description Panagrellus redivivus prd-miR-7948a-3p mature miRNA
Sequence 41 - CAAACGCACAUGGAGUCUGUGAU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295