Stem-loop prd-mir-7939j

Accession

MI0025689

Description

Panagrellus redivivus prd-mir-7939j precursor miRNA

Gene family

MIPF0001646; mir-7939

Sequence

UAUGGGCCCUCCUGGCAUUCUUGuuaucacuaaaaucaUGAAUGUUAUGAAGGCCCGUGG
((((((((.((.((((((((.((.............)).)))))))).)).)))))))).

Structure

-        C  C        U  uuauc 
 UAUGGGCC UC UGGCAUUC UG     a
 |||||||| || |||||||| ||     c
 GUGCCCGG AG AUUGUAAG ac     u
G        A  U        U  uaaaa 

Annotation confidence Not enough data

Genome context

KB455345.1: 203340-203399 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7939j

Mature prd-miR-7939j-5p

• Accession: MIMAT0030736
• Description: Panagrellus redivivus prd-miR-7939j-5p mature miRNA
• Sequence: 1 - UAUGGGCCCUCCUGGCAUUCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7939j-3p

• Accession: MIMAT0030737
• Description: Panagrellus redivivus prd-miR-7939j-3p mature miRNA
• Sequence: 39 - UGAAUGUUAUGAAGGCCCGUGG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295