Stem-loop prd-mir-49

Accession

MI0025691

Description

Panagrellus redivivus prd-mir-49 precursor miRNA

Sequence

CGCUGUUUCGCAUUGUGCUUCGuaaacgguugaagcgUAGCACCAUGUGAAGCUGCUCU
.((.(((((((((.(((((.(((...........))).))))).))))))))).))...

Structure

--C  U         U     U   aaac 
   GC GUUUCGCAU GUGCU CGu    g
   || ||||||||| ||||| |||    g
   CG CGAAGUGUA CACGA gcg    u
UCU  U         C     U   aagu 

Annotation confidence Not enough data

Genome context

KB455558.1: 360716-360774 [+]

Mature prd-miR-49-5p

• Accession: MIMAT0030740
• Description: Panagrellus redivivus prd-miR-49-5p mature miRNA
• Sequence: 1 - CGCUGUUUCGCAUUGUGCUUCG - 22
• Evidence: experimental ; Illumina [1]

Mature prd-miR-49-3p

• Accession: MIMAT0030741
• Description: Panagrellus redivivus prd-miR-49-3p mature miRNA
• Sequence: 38 - UAGCACCAUGUGAAGCUGCUCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295