miRBase entry: prd-mir-7944

Stem-loop prd-mir-7944

Accession

MI0025695

Description

Panagrellus redivivus prd-mir-7944 precursor miRNA

Sequence

AACGCACUUGAAUCAUCGUUAGCauaucugugaauugCAAACGUAAUUAAGUGCGCGGAG
..(((((((((.....((((.(((..((...))..))).))))...))))))))).....

Structure

---AA         AUCAU    A   ua  u 
     CGCACUUGA     CGUU GCa  uc  
     |||||||||     |||| |||  || g
     GCGUGAAUU     GCAA Cgu  ag  
GAGGC         --AAU    A   ua  u

Annotation confidence Not enough data

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Genome context

KB455323.1: 202183-202242 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from prd-mir-7944

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7944-5p

Accession	MIMAT0030748
Description	Panagrellus redivivus prd-miR-7944-5p mature miRNA
Sequence	1 - AACGCACUUGAAUCAUCGUUAGC - 23
Evidence	experimental Illumina [1]

Mature prd-miR-7944-3p

Accession	MIMAT0030749
Description	Panagrellus redivivus prd-miR-7944-3p mature miRNA
Sequence	38 - CAAACGUAAUUAAGUGCGCGGAG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295