miRBase entry: prd-mir-7950a-2

Stem-loop prd-mir-7950a-2

Accession

MI0025707

Description

Panagrellus redivivus prd-mir-7950a-2 precursor miRNA

Gene family

MIPF0001678; mir-7950

Sequence

GAGUUCAUCUGUUCCGCCGUUAAUguauaguucauuuuGCCGGCGAAAGAGUUGAACUU
(((((((.((.((.(((((..((((.......))))....))))).)).)).)))))))

Structure

       U  G  C     --UU    ua 
GAGUUCA CU UU CGCCG    AAUg  u
||||||| || || |||||    ||||  a
UUCAAGU GA AA GCGGC    uuac  g
       U  G  A     CGuu    uu

Annotation confidence Not enough data

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Genome context

KB455566.1: 59167-59225 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7950a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-7950a-5p

Accession	MIMAT0030770
Description	Panagrellus redivivus prd-miR-7950a-5p mature miRNA
Sequence	1 - GAGUUCAUCUGUUCCGCCGUUAAU - 24
Evidence	experimental Illumina [1]

Mature prd-miR-7950a-3p

Accession	MIMAT0030771
Description	Panagrellus redivivus prd-miR-7950a-3p mature miRNA
Sequence	39 - GCCGGCGAAAGAGUUGAACUU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295