Stem-loop prd-mir-7939g

Accession

MI0025708

Description

Panagrellus redivivus prd-mir-7939g precursor miRNA

Gene family

MIPF0001646; mir-7939

Sequence

UAUGGGCCCUCAUGGCAUUCUUGuuaucacuaaaaucaUGAAUGUUAUGAAGGUCCACGGC
..((((((.(((((((((((.((.............)).))))))))))).))))))....

Structure

--UA      C           U  uuauc 
    UGGGCC UCAUGGCAUUC UG     a
    |||||| ||||||||||| ||     c
    ACCUGG AGUAUUGUAAG ac     u
CGGC      A           U  uaaaa 

Annotation confidence Not enough data

Genome context

KB454973.1: 59150-59210 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-7939g

Mature prd-miR-7939g-5p

• Accession: MIMAT0030772
• Description: Panagrellus redivivus prd-miR-7939g-5p mature miRNA
• Sequence: 1 - UAUGGGCCCUCAUGGCAUUCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature prd-miR-7939g-3p

• Accession: MIMAT0030773
• Description: Panagrellus redivivus prd-miR-7939g-3p mature miRNA
• Sequence: 39 - UGAAUGUUAUGAAGGUCCACGGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295