miRBase entry: prd-mir-44

Stem-loop prd-mir-44


Accession
MI0025714
Description
Panagrellus redivivus prd-mir-44 precursor miRNA


Sequence

CUGGAUGUGUCAUCACGUCcauguaaccguuccaucaUGACUAGAUGAUCACAUUCAGC
((((((((((((((..(((.(((............))))))..))))).))))))))).

Structure
-         -     AC   c   uaacc 
 CUGGAUGUG UCAUC  GUC aug     g
 ||||||||| |||||  ||| |||      
 GACUUACAC AGUAG  CAG Uac     u
C         U     AU   -   uaccu 


Annotation confidence Not enough data
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Genome context
KB455309.1: 32637-32695 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from prd-mir-44
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-44-5p

Accession MIMAT0030784
Description Panagrellus redivivus prd-miR-44-5p mature miRNA
Sequence 1 - CUGGAUGUGUCAUCACGUC - 19
Evidence experimental
Illumina [1]

Mature prd-miR-44-3p

Accession MIMAT0030785
Description Panagrellus redivivus prd-miR-44-3p mature miRNA
Sequence 38 - UGACUAGAUGAUCACAUUCAGC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295