miRBase entry: prd-mir-277

Stem-loop prd-mir-277

Accession

MI0025727

Description

Panagrellus redivivus prd-mir-277 precursor miRNA

Sequence

GUGCCAGGAGCUGCGUUUUCGgcauaauuacagcacgUAAAUGCACCUAUCUGGUAUGC
((((((((((.(((((((.((((.........)).)).))))))).)).))))))))..

Structure

--        -  C       U  -  aua 
  GUGCCAGG AG UGCGUUU CG gc   a
  |||||||| || ||||||| || ||   u
  UAUGGUCU UC ACGUAAA gc cg   u
CG        A  C       U  a  aca

Annotation confidence Not enough data

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Genome context

KB455532.1: 892241-892299 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from prd-mir-277

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature prd-miR-277-5p

Accession	MIMAT0030810
Description	Panagrellus redivivus prd-miR-277-5p mature miRNA
Sequence	1 - GUGCCAGGAGCUGCGUUUUCG - 21
Evidence	experimental Illumina [1]

Mature prd-miR-277-3p

Accession	MIMAT0030811
Description	Panagrellus redivivus prd-miR-277-3p mature miRNA
Sequence	38 - UAAAUGCACCUAUCUGGUAUGC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 23410827
The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
"Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
"Genetics (2013) 193:1279-1295