miRBase entry: prd-mir-39

Stem-loop prd-mir-39


Accession
MI0025728
Description
Panagrellus redivivus prd-mir-39 precursor miRNA


Sequence

GUGGAUGUCUUCCACGGUAAAUgauaaccgcuuucauUCACCGGGAACUCAUUCAUGC
(((((((..((((.((((.(((((.........))))).))))))))..)))))))..

Structure
--       UC    A    A     uaa 
  GUGGAUG  UUCC CGGU AAUga   c
  |||||||  |||| |||| |||||   c
  UACUUAC  AAGG GCCA Uuacu   g
CG       UC    -    C     uuc 


Annotation confidence Not enough data
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Genome context
KB455309.1: 33005-33062 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from prd-mir-39
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-39-5p

Accession MIMAT0030812
Description Panagrellus redivivus prd-miR-39-5p mature miRNA
Sequence 1 - GUGGAUGUCUUCCACGGUAAAU - 22
Evidence experimental
Illumina [1]

Mature prd-miR-39-3p

Accession MIMAT0030813
Description Panagrellus redivivus prd-miR-39-3p mature miRNA
Sequence 38 - UCACCGGGAACUCAUUCAUGC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295