miRBase entry: prd-mir-7950b

Stem-loop prd-mir-7950b


Accession
MI0025730
Description
Panagrellus redivivus prd-mir-7950b precursor miRNA
Gene family
MIPF0001678; mir-7950


Sequence

GUUCACCUUUUGCGCCGUUAAuguaaaguucauuguGCCGGCGAAAGAGUUGAACUU
(((((.(((((.(((((.(((((.......)))))...))))).))))).)))))..

Structure
--     C     G     --U     ua 
  GUUCA CUUUU CGCCG   UAAug  a
  ||||| ||||| |||||   |||||  a
  CAAGU GAGAA GCGGC   guuac  g
UU     U     A     CGu     uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB455566.1: 61094-61150 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-7950b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7950b-5p

Accession MIMAT0030816
Description Panagrellus redivivus prd-miR-7950b-5p mature miRNA
Sequence 1 - GUUCACCUUUUGCGCCGUUAA - 21
Evidence experimental
Illumina [1]

Mature prd-miR-7950b-3p

Accession MIMAT0030817
Description Panagrellus redivivus prd-miR-7950b-3p mature miRNA
Sequence 37 - GCCGGCGAAAGAGUUGAACUU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295