miRBase entry: prd-mir-7966b

Stem-loop prd-mir-7966b


Accession
MI0025740
Description
Panagrellus redivivus prd-mir-7966b precursor miRNA


Sequence

CACGUUGAUGAUCCAACCUCAGCGuauucuuugcuuaucgcUGAGGUGCGACAUUCCGUGUA
((((..((((.((..(((((((((..............)))))))))..)))))).))))..

Structure
--    UU    A  CA         uauucu 
  CACG  GAUG UC  ACCUCAGCG      u
  ||||  |||| ||  |||||||||       
  GUGC  UUAC AG  UGGAGUcgc      u
AU    -C    -  CG         uauucg 


Annotation confidence Not enough data
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Genome context
KB455323.1: 202619-202680 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from prd-mir-7966b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7966b-5p

Accession MIMAT0030834
Description Panagrellus redivivus prd-miR-7966b-5p mature miRNA
Sequence 1 - CACGUUGAUGAUCCAACCUCAGCG - 24
Evidence experimental
Illumina [1]

Mature prd-miR-7966b-3p

Accession MIMAT0030835
Description Panagrellus redivivus prd-miR-7966b-3p mature miRNA
Sequence 42 - UGAGGUGCGACAUUCCGUGUA - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295