miRBase entry: prd-mir-7971

Stem-loop prd-mir-7971


Accession
MI0025745
Description
Panagrellus redivivus prd-mir-7971 precursor miRNA


Sequence

AGCGUUAAUUGAAGUUGUUCAACGuucuuuacccacagauuacgcaaaucugcuaccgUUGAACAACUAAUUAACGCUGC
((((((((((..((((((((((((...........((((((.....))))))....))))))))))))))))))))))..

Structure
--          GA            uucuuuaccca      a 
  AGCGUUAAUU  AGUUGUUCAACG           cagauu c
  ||||||||||  ||||||||||||           |||||| g
  UCGCAAUUAA  UCAACAAGUUgc           gucuaa c
CG          --            -------cauc      a 


Annotation confidence Not enough data
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Genome context
KB455348.1: 102347-102426 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-7971
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-7971-5p

Accession MIMAT0030844
Description Panagrellus redivivus prd-miR-7971-5p mature miRNA
Sequence 1 - AGCGUUAAUUGAAGUUGUUCAACG - 24
Evidence experimental
Illumina [1]

Mature prd-miR-7971-3p

Accession MIMAT0030845
Description Panagrellus redivivus prd-miR-7971-3p mature miRNA
Sequence 59 - UUGAACAACUAAUUAACGCUGC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295