Stem-loop stu-MIR7984b

Accession

MI0025762

Description

Solanum tuberosum stu-MIR7984b precursor miRNA

Gene family

MIPF0001671; MIR7984

Literature search

1 open access papers mention stu-MIR7984b
(1 sentences)

Sequence

AUACCGAACUUUGGAAAUGACCUUuuaccccugcacuauuuaauaguuauuuuaaagguauauaugugcccagguggacaucauaaaaauugcaucauuauaaauaguaacgugucuacgugagcaaauauauaccuuuaaaauacacuauuaaauaguguagggguaaaaGGUCUUUCAUAAAAUUUGGUAUCG
((((((((.((((((((.(((((((((((((((((((((((((((((((((((((((((((((((.(((.((.((((((((..............................)))))))).)).))).)))))))))))))))))).))))))))))))))))))))))))))))))))).)))).))))))))..

Structure

--        C    -    U                             -                  g   c  g        cauaaaaauugcau 
  AUACCGAA UUUG GAAA GACCUUuuaccccugcacuauuuaauagu uauuuuaaagguauauau ugc ca guggacau              c
  |||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| || ||||||||               
  UAUGGUUU AAAU CUUU CUGGaaaauggggaugugauaaauuauca auaaaauuuccauauaua acg gu caucugug              a
GC        A    A    -                             c                  a   a  g        caaugauaaauauu 

Annotation confidence Not enough data

Genome context

JH138511.1: 123046-123240 [-]

Mature stu-miR7984b-5p

• Accession: MIMAT0030853
• Description: Solanum tuberosum stu-miR7984b-5p mature miRNA
• Sequence: 1 - AUACCGAACUUUGGAAAUGACCUU - 24
• Evidence: experimental ; Illumina [1]

Mature stu-miR7984b-3p

• Accession: MIMAT0031184
• Description: Solanum tuberosum stu-miR7984b-3p mature miRNA
• Sequence: 172 - GGUCUUUCAUAAAAUUUGGUAUCG - 195
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233