Stem-loop stu-MIR8005c

Accession

MI0025806

Description

Solanum tuberosum stu-MIR8005c precursor miRNA

Gene family

MIPF0001677; MIR8005

Sequence

gguuuaguguuuagaauuuaggauuaaggguuuaggguuuaggguuaggguucaauguuuggaguuuaggauauaggauuuaggguuuaggauuuaggguuuagggauuagaguuuaggauuuagaguuuaggguuuagaguuugcguuuagguuuuaggguuuaggcuuuuguUUUAGAGUUUAAGGUUUAGAGUUU
..((((((.((........)).))))))...(((((.((((((.((.((((((.((((((........)))))).)))))).)).)))))).)))))(.((((((..(((((.((((((((..((((((((((.(((((((((((....))))))))))).)))))))))).)))))))).)))))..)))))).)..

Structure

gguuuaguguuuagaauuuaggauuaaggguuuaggguuuaggguuaggguucaauguuuggaguuuaggauauaggauuuaggguuuaggauuuag g      ga     g        uu          g           c 
                                                                                                 g uuuagg  uuaga uuuaggau  agaguuuagg uuuagaguuug g
                                                                                                 | ||||||  ||||| ||||||||  |||||||||| |||||||||||  
                                                                                                 U AGAUUU  AAUUU AGAUUUug  uuucggauuu ggauuuuggau u
-----------------------------------------------------------------------------------------------UU G      GG     G        -u          g           u 

Annotation confidence Not enough data

Genome context

JH138203.1: 492626-492823 [+]

Mature stu-miR8005c

• Accession: MIMAT0030897
• Description: Solanum tuberosum stu-miR8005c mature miRNA
• Sequence: 175 - UUUAGAGUUUAAGGUUUAGAGUUU - 198
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233