miRBase entry: stu-MIR8007b

Stem-loop stu-MIR8007b


Accession
MI0025820
Description
Solanum tuberosum stu-MIR8007b precursor miRNA
Gene family
MIPF0001839; MIR8007

Literature search
2 open access papers mention stu-MIR8007b
(2 sentences)

Sequence

AUGUGACACUUUUUGAAUUUCGAGauucaaacaagucuaucuuugaccguaaauuuuucauacaucuuuuuaauauuuuguguuguugugacuuauaguacuuuuuauguaguuuauaaauauauaaauuucauuucaaaaaaauuaaagauuacauggguaaauuaucggucaaacuuaaacuguuugacucuCGAAAAAUGAAAAGUACCACAUAA
(((((..(((((((...((((((((.(((((((.((.((..((((((((..((((((((((..((((((.......(((((((..(((((((((((((......))))).)).))))))..)))))))..................))))))...))))).)))))..))))))))..)).))))))))).))))))))...)))))))..)))))..

Structure
--     AC       GAA        u       a  c  uc        ua     -     -ac      -----------uuaauau       ug      -  -     ua 
  AUGUG  ACUUUUU   UUUCGAGa ucaaaca gu ua  uuugaccg  aauuu uucau   aucuuu                  uuugugu  uuguga cu uauag  c
  |||||  |||||||   |||||||| ||||||| || ||  ||||||||  ||||| |||||   ||||||                  |||||||  |||||| || |||||   
  UACAC  UGAAAAG   AAAGCucu aguuugu ca au  aaacuggc  uuaaa gggua   uagaaa                  aaauaua  aauauu ga guauu  u
AA     CA       UAA        c       -  a  uc        ua     u     cau      uuaaaaaaacuuuacuuu       ua      u  u     uu 


Annotation confidence Not enough data
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Genome context
JH138003.1: 403573-403790 [+]

Database links

Mature stu-miR8007b-5p

Accession MIMAT0030911
Description Solanum tuberosum stu-miR8007b-5p mature miRNA
Sequence 1 - AUGUGACACUUUUUGAAUUUCGAG - 24
Evidence experimental
Illumina [1]

Mature stu-miR8007b-3p

Accession MIMAT0031197
Description Solanum tuberosum stu-miR8007b-3p mature miRNA
Sequence 195 - CGAAAAAUGAAAAGUACCACAUAA - 218
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233