miRBase entry: stu-MIR8001b

Stem-loop stu-MIR8001b


Accession
MI0025826
Description
Solanum tuberosum stu-MIR8001b precursor miRNA
Gene family
MIPF0001852; MIR8001


Sequence

AUGGGGAUUAGUAUGAAAAUUUGCaggaaaauaaguuuccugcGGAUUUUCAUACUAAUUCCUAGAA
.(((((((((((((((((((((((((((((.....)))))))))))))))))))))))))))))...

Structure
--A                             a 
   UGGGGAUUAGUAUGAAAAUUUGCaggaaa u
   ||||||||||||||||||||||||||||| a
   AUCCUUAAUCAUACUUUUAGGcguccuuu a
AAG                             g 


Annotation confidence Not enough data
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Genome context
JH138045.1: 943713-943779 [-]

Database links

Mature stu-miR8001b-5p

Accession MIMAT0030917
Description Solanum tuberosum stu-miR8001b-5p mature miRNA
Sequence 1 - AUGGGGAUUAGUAUGAAAAUUUGC - 24
Evidence experimental
Illumina [1]

Mature stu-miR8001b-3p

Accession MIMAT0031200
Description Solanum tuberosum stu-miR8001b-3p mature miRNA
Sequence 44 - GGAUUUUCAUACUAAUUCCUAGAA - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233