Stem-loop stu-MIR399a

Accession

MI0025873

Description

Solanum tuberosum stu-MIR399a precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399a
(14 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUGcagugaucuauuuaagcugacaUGCCAAAGGAGAGCUGCCCUG
((((..((((((.((((((((((((...........)))).)))))))).))))))..))))..

Structure

--    UA      A        -    gauc 
  GGGC  CUCUCU UUGGCAUG cagu    u
  ||||  |||||| |||||||| ||||    a
  CCCG  GAGAGG AACCGUac gucg    u
GU    UC      A        a    aauu 

Annotation confidence Not enough data

Genome context

JH137943.1: 1321860-1321923 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from stu-MIR399a

Mature stu-miR399a-5p

• Accession: MIMAT0030964
• Description: Solanum tuberosum stu-miR399a-5p mature miRNA
• Sequence: 1 - GGGCUACUCUCUAUUGGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR399a-3p

• Accession: MIMAT0031227
• Description: Solanum tuberosum stu-miR399a-3p mature miRNA
• Sequence: 44 - UGCCAAAGGAGAGCUGCCCUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233