Stem-loop stu-MIR399b

Accession

MI0025874

Description

Solanum tuberosum stu-MIR399b precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399b
(14 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUGcacuuauauauuuaagcugacaUGCCAAAGGAGAGCUGCCCUG
((((..((((((.((((((((((((((......)))).)).)))))))).))))))..))))..

Structure

--    UA      A        -  -    ua 
  GGGC  CUCUCU UUGGCAUG ca cuua  u
  ||||  |||||| |||||||| || ||||   
  CCCG  GAGAGG AACCGUac gu gaau  a
GU    UC      A        a  c    uu 

Annotation confidence Not enough data

Genome context

JH137943.1: 1330373-1330436 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from stu-MIR399b

Mature stu-miR399b-5p

• Accession: MIMAT0030965
• Description: Solanum tuberosum stu-miR399b-5p mature miRNA
• Sequence: 1 - GGGCUACUCUCUAUUGGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR399b-3p

• Accession: MIMAT0031228
• Description: Solanum tuberosum stu-miR399b-3p mature miRNA
• Sequence: 44 - UGCCAAAGGAGAGCUGCCCUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233