Stem-loop stu-MIR399c

Accession

MI0025875

Description

Solanum tuberosum stu-MIR399c precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention stu-MIR399c
(12 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUGcaccuauauauuuaagcugacaUGCCAAAGGAGAGCUGCCCUG
((((..((((((.((((((((((.((.........)).)).)))))))).))))))..))))..

Structure

--    UA      A        -  c  aua 
  GGGC  CUCUCU UUGGCAUG ca cu   u
  ||||  |||||| |||||||| || ||   a
  CCCG  GAGAGG AACCGUac gu ga   u
GU    UC      A        a  c  auu 

Annotation confidence Not enough data

Genome context

JH137943.1: 1345907-1345970 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from stu-MIR399c

Mature stu-miR399c-5p

• Accession: MIMAT0030966
• Description: Solanum tuberosum stu-miR399c-5p mature miRNA
• Sequence: 1 - GGGCUACUCUCUAUUGGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR399c-3p

• Accession: MIMAT0031229
• Description: Solanum tuberosum stu-miR399c-3p mature miRNA
• Sequence: 44 - UGCCAAAGGAGAGCUGCCCUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233