Stem-loop stu-MIR399e

Accession

MI0025877

Description

Solanum tuberosum stu-MIR399e precursor miRNA

Literature search

4 open access papers mention stu-MIR399e
(12 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUGcacuuauacaucuaagcugacaUGCCAAAGGAGAGCUGCCCUG
((((..((((((.((((((((((((((......)))).)).)))))))).))))))..))))..

Structure

--    UA      A        -  -    ua 
  GGGC  CUCUCU UUGGCAUG ca cuua  c
  ||||  |||||| |||||||| || ||||   
  CCCG  GAGAGG AACCGUac gu gaau  a
GU    UC      A        a  c    cu 

Annotation confidence Not enough data

Genome context

JH137943.1: 1357658-1357721 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from stu-MIR399e

Mature stu-miR399e-5p

• Accession: MIMAT0030968
• Description: Solanum tuberosum stu-miR399e-5p mature miRNA
• Sequence: 1 - GGGCUACUCUCUAUUGGCAUG - 21
• Evidence: experimental ; Illumina [1]

Mature stu-miR399e-3p

• Accession: MIMAT0031231
• Description: Solanum tuberosum stu-miR399e-3p mature miRNA
• Sequence: 44 - UGCCAAAGGAGAGCUGCCCUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23437348
   Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
   Zhang R, Marshall D, Bryan GJ, Hornyik C
   PLoS One (2013) 8:e57233