miRBase entry: stu-MIR399h

Stem-loop stu-MIR399h


Accession
MI0025880
Description
Solanum tuberosum stu-MIR399h precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
5 open access papers mention stu-MIR399h
(22 sentences)

Sequence

GGGCUACUCUCUAUUGGCAUGcaguuaucacauauuucugcuaacaaaccaagggagaguuguccua
((((.(((((((.((((...((((..((.....))..)))).......)))).))))))).))))..

Structure
--    U       A    ----CAU    uu  c 
  GGGC ACUCUCU UUGG       Gcag  au a
  |||| ||||||| ||||       ||||  || c
  ccug ugagagg aacc       cguc  ua a
au    u       g    aaacaau    uu  u 


Annotation confidence Not enough data
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Genome context
JH138221.1: 24637-24703 [+]

Database links

Mature stu-miR399h

Accession MIMAT0030971
Description Solanum tuberosum stu-miR399h mature miRNA
Sequence 1 - GGGCUACUCUCUAUUGGCAUG - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23437348
    Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing
    Zhang R, Marshall D, Bryan GJ, Hornyik C
    PLoS One (2013) 8:e57233